PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08546
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 329aa    MW: 36515.8 Da    PI: 4.9653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08546genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18119169155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+++AeIrdp+    r  r++lg++ taeeAak ++ a+ +l+g
  PEQU_08546 119 PRFRGVRRRP-WGKFAAEIRDPT----RrVRVWLGTYNTAEEAAKVYDSAAIQLRG 169
                 689*******.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-29119176No hitNo description
PfamPF008471.6E-12119169IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-20120177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-28120177IPR001471AP2/ERF domain
PROSITE profilePS5103223.288120177IPR001471AP2/ERF domain
SMARTSM003801.1E-32120183IPR001471AP2/ERF domain
PRINTSPR003672.1E-9121132IPR001471AP2/ERF domain
PRINTSPR003672.1E-9143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
WKTMEGQYLA QLKHSVHFEV TSKPIHHLSR RPAMPSFAGA NTVRFFCDDV DATDSDSDSD  60
SGEPCFGRRR VKRYVQEIRF EERLDMAAGE GKAVKASAGK RKKKGIASSE KQQPITGAPR  120
FRGVRRRPWG KFAAEIRDPT RRVRVWLGTY NTAEEAAKVY DSAAIQLRGP DAATNFSSAP  180
AVEEPPRPLP ARNLSMTNLS VSGGYESSED SHNICSPTSV LRGFSSSTAV QDEPEKPSSS  240
GSISLPEELA GELMAFDEMP LYNDFLDLSA TEPRFFENPM DQFGLFARES VIPNTCFDLR  300
SSTYEDGDDL FEEIGDLFPL EPLPPVTIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17121176662ATERF1
3gcc_A2e-17121176662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783954.15e-89PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLM0TRY82e-73M0TRY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19850_0014e-73(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-40cytokinin response factor 2